PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.chr_20_#_144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bHLH
Protein Properties Length: 262aa    MW: 28538.1 Da    PI: 5.0085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.chr_20_#_144genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11105155255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r++++ rE+rRRd +Ns+feeL  +l +    +  K +Ka+++  A++ Ik+L+
  fgenesh1_pg.chr_20_#_144 105 RKTKSTREKRRRDVLNSRFEELIAVLEPG---SMMKADKATVVVAATQLIKQLR 155
                               999*************************8...89******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1197164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-8101157No hitNo description
PROSITE profilePS5088812.055103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-9105173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-5109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANQTGRVAT DEGLIARDDA KVLASNDWLN DFFTHFDGEE SPFDIAAAFD VGTGTLASGI  60
QEKPVGVTST AGEECPKKRK AEDGEEKVEA NQAQARSYTL SEGARKTKST REKRRRDVLN  120
SRFEELIAVL EPGSMMKADK ATVVVAATQL IKQLRAEHSR LANMIMHFQE DNIRQAESAR  180
TLAAERDALV KEKTELLHEK LRIEAQLQGF LASMPFASPV EGVTAPAAKT MRGNAAWTVP  240
TPFLPANEEA EEDVTLRAPV A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422567.12e-71predicted protein
TrEMBLA0A096PAY99e-76A0A096PAY9_
STRINGA4SB737e-71(Ostreococcus lucimarinus CCE9901)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-12bHLH family protein